Journal Articles
- Monnard, P. A., Growth and shape transformations of giant phospholipid vesicles upon interaction with an aqueous oleic acid suspension, ACS publications, (2008).
- Görnerup, O., Nilsson-Jacobi, M., A method for inferring hierarchical dynamics in stochastic processes, Advances in Complex Systems 11, (2008) 1-16. http://arxiv.org/abs/nlin.AO/0703034/
- Hayden, E., von Kiedrowski, G., Lehman, N., Systems chemistry on ribozyme self-construction: Evidence for anabolic autocatalysis in a recombination network, Angewandte Chemie International Edition, (2008) in press. http://www3.interscience.wiley.com/journal/117943443/tocgroup
- von Kiedrowski, G., Leslie e. Orgel (1927-2007), Angewandte Chemie International Edition 47, (2008) 2338-9. http://www3.interscience.wiley.com/journal/117943443/tocgroup http://www3.interscience.wiley.com/cgi-bin/fulltext/117932024/PDFSTART
- Zimmermann, J., Cebulla, M. P. J., Mönninghoff, S., von Kiedrowski, G., Self-assembly of a DNA dodecahedron from 20 trisoligonucleotides with c3h linkers, Angewandte Chemie International Edition 47, (2008) 3626-30. http://www3.interscience.wiley.com/journal/117943443/tocgroup http://www3.interscience.wiley.com/cgi-bin/fulltext/117949756/PDFSTART
- Görnerup, O., Crutchfield, J. P., Hierarchical self-organization in the finatary process soup, Artificial Life 14, (2008) 245 – 54. http://www.mitpressjournals.org/doi/pdf/10.1162/artl.2008.14.3.14301
- Knutson, C. et al., Metabolic photo-fragmentation kinetics for a minimal protocell: Rate limiting factors, efficiency, and implications for evolution, Artificial Life 14, (2008) 189-201.
- Solé, R. V., Valverde, S., Rasmussen, S., Molecular self-assembly with dissipative lattice dynamics (dld) models, Artificial Life submitted, (2008). http://complex.upf.es/index.php?page=30
- Tangen, U., Enzyme-like replication de novo in a micro-controller environment, Artificial Life submitted, (2008).
- Sardanyés, J., Error threshold ghosts in a simple hypercycle with error prone self-replication, Chaos, Solitons and Fractals 35, (2008) 313-9. http://complex.upf.es/index.php?page=24
- Sardanyés, J., Ghosts in high dimensional non-linear dynamical systems: The example of the hypercycle, Chaos, Solitons and Fractals in press, (2008). http://complex.upf.es/index.php?page=22
- Chemnitz, S., Tangen, U., Wagler, P. F., Maeke, T., McCaskill, J. S., Electronically programmable membranes for improved biomolecule handling in micro-compartments on-chip, Chemical Engineering Journal 135S, (2008) 276-9. http://dx.doi.org/10.1016/j.cej.2007.07.061
- Monnard, P. Z., HJ, Eutectic phase in water-ice: A self-assembled environment conducive to metal-catalyzed non-enzymatic rna polymerization, Chemistry & Biodiversity Accepted, (2008).
- Forlin, M. et al., Evolutionary experiments for self-asembling amphiphilic systems, Chemometrics and Intelligent Laboratory Systems, (2008) 153-60.
- Weronski, P., Jiang, Y., Rasmussen, S., Application of molecular dynamics computer simulations in the design of a minimal self-replicating molecular machine, Complexity 13, (2008) 41547.
- Theis, M. G., G. et al., Optimal formulation of complex chemical systems with a genetic algorithm, CompPlexUs accepted, (2008).
- Monnard, P. A., M., D., Ziock, H.-J., Amphiphile nanostructures as model for artificial cell-like entities, Current Nanoscience 4, (2008) 71-87.
- Monnard, P. A., Ziock, H., DeClue, M., Organic nano-compartments as biomimetic reactors, and protocells, Current Nanoscience 4, (2008) 71-87.
- Füchslin, R., Maeke, T., McCaskill, J. S., Multipolar reactive dpd: A novel tool for spatially resolved simulations in cell biology, European Physical Journal E (EPJE) submitted, (2008). http://arxiv.org/abs/0705.1445.
- Solé, R. V., Evolution and self-assembly of protocells, International Journal of Biochemistry and Cell Biology submitted, (2008). http://complex.upf.es/index.php?page=32
- Zhou, X., Jiang, Y., Rasmussen, S., H., Z., Bridging coarse-grained models by jump-in-sample simulations, J. Chem. Phys 128, (2008) 174107-1 - -7.
- Eriksson, A., Nilsson Jacobi, M., Nyström, J., Tunstrøm, K., Effective thermostat induced by coarse-graining of spc water, Journal of Chemical Physics 129, (2008) 024106. http://arxiv.org/abs/0802.1157
- Füchslin, R. M., Eriksson, A., Fellermann, H., Ziock, H., Coarse-graining and scaling in dissipative particle dynamics, Journal of Chemical Physics submitted, (2008). http://arxiv.org/abs/cond-mat/0703682
- Tamulis, A., Tamulis, V., Quantum mechanical design of molecular electronics or gate for regulation of minimal cell functions, Journal of Computational and Theoretical Nanoscience 5, (2008) 545-53. http://www.ingentaconnect.com/content/asp/jctn/2008/00000005/00000004/art00014?token=0042115d25c5f3b3b47672848773b257b556e6d7b384f58762f67e915d9c234a65
- Monnard, P. S., J, Metal-ion catalyzed polymerization in the eutectic phase in water-ice: A possible approach to template-directed rna polymerization, Journal of Inorganic Biochemistry 102, (2008) 1104-11.
- Fontich, E., Sardanyés, J., General scaling law in the saddle-node bifurcation: A complex phase space study, Journal of Physics A: Mathematical and Theoretical 41, (2008) 38230. http://complex.upf.es/index.php?page=23
- Sardanyés, J., Fontich, E., Replicator dynamics on the phase plane: The role of intraspecific cooperation in competition, Journal of Physics A: Mathematical and Theoretical in press, (2008). http://complex.upf.es/index.php?page=26
- Melas, V., Pepelyshev, A., Poli, I., Seeking designs for mixture experiments with many ingredients, Journal of Statistical Planning and Inference submitted, (2008).
- Carletti, T., Serra, R., Poli, I., Villani, M., Filisetti, A., Sufficient conditions for emergent synchronization in protocell models, Journal of Theoretical Biology accepted, (2008).
- Sardanyés, J., Elena, S., Solé, R. V., Simple quasispecies models for the survival-of-the-flattest effect: The role of space, Journal of Theoretical Biology 250, (2008) 560-8. http://complex.upf.es/index.php?page=20
- Sardanyés, J., Fontich, E., On the metapopulation dynamics of autocatalytic replicators, Journal of Theoretical Biology submitted, (2008). http://complex.upf.es/index.php?page=27
- DeClue, M. S. et al., Towards artificial life: Catalytic coupling of information, metabolism, and container in a minimal protocell, (LA-UR 07-2511) submitted, (2008).
- Bedau, M. A., Is weak emergence just in the mind? , Minds and Machines In press, (2008).
- Tamulis, A., Quantum mechanical control of artificial minimal living cells, Neuro Quantology Journal 6, (2008). http://www.neuroquantology.com/JOURNAL/index.php/nq/issue/current
- Eriksson, A., Nilsson Jacobi, M., Nyström, J., Tunstrøm, K., Using force covariance to derive effective stochastic interactions in dissipative particle dynamics, Physical Review E 77, (2008) 016707. http://arxiv.org/abs/0704.3324?context=cond-mat
- Sardanyés, J., Solé, R. V., Matching allele dynamics and coevolution in a minimal predator-prey replicator model, Physics Letters A 372, (2008) 341-50. http://complex.upf.es/index.php?page=21
- Macía, J., Solé, R. V., The physics of protocell replication: From fusion to fission, Physics of Life Reviews submitted, (2008). http://complex.upf.es/index.php?page=28
- Monnard, P. A., The dawn of the rna world: Rna polymerization from monoribonucleotides underprebiotically plausible conditions, Prebiotic Evolution and Astrobiology, eds Jeffrey T. F. Wong, Landes Bioscience, (2008).
- Tamulis, A., Quantum self-assembly of artificial minimal living cells and molecular electronics control, Viva Origino 36, (2008) 10-9. http://www.origin-life.gr.jp/3602/3602J.html
- Patzke, V., von Kiedrowski, G., Self-replicating systems, Arkivoc 5, (2007) 293-310. http://www.arkat-usa.org/ http://www.arkat-usa.org/get-file/19231/
- Fellermann, H., Rasmussen, S., Ziock, H. J., Solé, R. V., Life cycle of a minimal protocell: A dissipative particle dynamics study, Artificial Life 13, (2007) 319-45. http://complex.upf.es/index.php?page=16
- Serra, R., Carletti, T., Poli, I., Synchronization phenomena in surface reaction models of protocells, Artificial Life 13, (2007) 1-16.
- Miyashita, S., Murata, S., Emerging cell array based on reaction-diffusion, Artificial Life and Robotics 11, (2007) 32-6.
- Murata, S. M. S., Array based on reaction-diffusion, Artificial Life and Robotics 11, (2007) 32-6.
- Miyashita, S., morphogenesis of 3d sheets exploiting a spatial condition, Artificial Life and Robotics 11, (2007) 139-44.
- Weronski, P., Jiang, Y., Rasmussen, S., Molecular dynamics study of small pna molecules in lipid-water system, Biophys. J. 92, (2007) 3081-91.
- Sardanyés, J., Solé, R. V., Delayed transitions in nonlinear replicator networks: About ghosts and hypercycles, Chaos, Solitons and Fractals 31, (2007) 305-15. http://complex.upf.es/index.php?page=18
- Sardanyés, J., Solé, R. V., Red queen strange attractors in host-parasite replicator gene-for-gene coevolution, Chaos, Solitons and Fractals 32, (2007) 1666-78. http://complex.upf.es/index.php?page=13
- Sardanyés, J., Solé, R. V., The role of cooperation and parasites in nonlinear replicator delayed extinctions, Chaos, Solitons and Fractals 31, (2007) 1279-96. http://complex.upf.es/index.php?page=9
- Tamulis, A., Tsifrinovich, V. I., Tretiak, S., Berman, G. P., Allara, D., Neutral radical molecules ordered in self-assembled monolayer systems for quantum information processing, Chemical Physics Letters 436, (2007) 144 - 9. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TFN-4MSHY29-1&_user=1049315&_rdoc=1&_fmt=&_orig=search&_sort=d&view;=c&_version=1&_urlVersion=0&_userid=1049315&md5;=05d0ce1acabe4bb298cbdd69e56c0770
- Helvik, T., Lindgren, K., Nordahl, M. G., Continuity of information transport in surjective cellular automata, Communications in Mathematical Physics 272, (2007) 53-74. http://www.springerlink.com/content/162044h13423t1h1/
- Görnerup, O., Crutchfield, J. P., Primordial evolution in the finitary process soup, Electronic Journal of Theoretical Physics Special Issue 2007 4, (2007). http://www.ejtp.com/specialissue2007.html
- Carletti, T., Fanelli, D., From chemical equations to evolution: Emergence of species, Europhysics Letters 77, (2007) 18005p1–p6.
- Wagler, P. F., Hempelmann, W., Programmierbare flüsse in mikrofluidikchips, GIT Labor-Fachzeitschrift, (2007) 736,. http://www.wagler-home.de/publications/svx_media/git0907_736_wagler.pdf
- Sardanyés, J., Solé, R. V., Chaotic stability in spatially-resolved host-parasite replicators: The red queen on a lattice, International Journal of Bifurcations and Chaos 17, (2007) 589-606. http://complex.upf.es/index.php?page=19
- Fernando, C., von Kiedrowski, G., Szathmary, E., A stochastic model of nonenzymatic nucleic acid replication: Elongators sequester replicators, Journal of Molecular Evolution 64, (2007) 572-85. http://www.springer.com/life+sci/cell+biology/journal/239 http://springerlink.com/content/5393437r700123r1/fulltext.pdf
- Macía, J., Solé, R. V., Protocell self-reproduction in a spatially explicit metabolism-vesicle system, Journal of Theoretical Biology 245, (2007) 400-10. http://complex.upf.es/index.php?page=14
- Tamulis, A., Artificial living cells and nanobiorobots, Mokslas ir Technika (Science and Technology) 12, (2007) 26-8. http://www.ktl.mii.lt/mt/
- Sen, A., Nielsen, P. E., On the stability of peptide nucleic acid duplexes in the presence of organic solvents, Nucleic Acids Research, (2007) 3367-74. http://nar.oxfordjournals.org/cgi/content/full/35/10/3367
- Monnard, P. A., Ziock, H. J., Question 9: Prospects for the construction of artificial cells or protocells, Origins of Life and Evolution of Biospheres 37, (2007) 469-72.
- Tamulis, A., Tamulis, V., Question 9: Quantum self-assembly and photoinduced electron tunneling in photosynthetic systems of artificial minimal living cells, Origins of Life and Evolution of Biospheres 37, (2007) 473-6. http://www.springerlink.com/content/87x5333271jm1288/?p=11a3ed962f4449a89d38275cb822029cπ=32
- Fellermann, H., Solé, R., Self-replicating nanocells: A physically embodied, information-free scenario, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1803-11.
- Fellermann, H., Solé, R. V., Minimal model of self-replicating nanocells: A physically embodied information-free scenario, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1803-11. http://complex.upf.es/index.php?page=15
- Macía, J., Solé, R. V., Synthetic turing protocells: Self-reproducing vesicles through symmetry-breaking instabilities, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1821-9. http://complex.upf.es/index.php?page=10
- McCaskill, J., Packard, N. H., Rasmussen, S., Bedau, M. A., Evolutionary self-organization in complex fluids, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1763-79. http://journals.royalsociety.org/content/y2k482233q3x8218/?p=6da59ebaac5140d9bc3ac26784a45892π=4 http://www.journals.royalsoc.ac.uk/content/y2k482233q3x8218/fulltext.pdf
- Monnard, P. A., Luptak, A., Deamer, D. W., Models of primitive cellular life: Polymerases and templates in liposomes, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1741-50.
- Munteanu, A., Attolini, C., Rasmussen, S., Ziock, H., Solé, R., Generic darwinian selection in catalytic protocell assemblies, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1847-55.
- Munteanu, A. et al., Generic darwinian selection in protocell assemblies, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 847-1855. http://complex.upf.es/index.php?page=17
- Rocheleau, T., Rasmussen, S., Nielsen, P., Nilsson Jacobi, M., Ziock, H., Emergence of protocellular growth laws, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1841-5. http://www.santafe.edu/research/publications/workingpapers/06-11-044.pdf
- Solé, R. V., Munteanu, A., Rodriguez-Caso, C., Macía, J., Synthetic-protocell biology: From reproduction to computation, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1727-39.
- Solé, R. V., Munteanu, A., Rodriguez-Caso, C., Macía, J., Synthetic protocell biology: From reproduction to computation, Phil. Trans. Roy. Soc. Lond. ser. B 362, (2007) 1727-39. http://complex.upf.es/index.php?page=11
- Sardanyés, J., Solé, R. V., Spatio-temporal dynamics in simple asymmetric hypercycles under weak parasitic coupling, Physica D 231, (2007) 116-29. http://complex.upf.es/index.php?page=12
- Valverde, S., Sole, R. V., Bedau, M. A., Packard, N. H., Topology and evolution of technology innovation networks, Physical Review E 76, (2007) 056118-1 – -7. http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id;=PLEEE8000076000005056118000001&idtype;=cvips&gifs;=yes
- Savage, V. M. et al., Scaling of number, size, and metabolic rate of cells with body size in mammals, Proc. Natl. Acad. Sci. USA 104, (2007) 4718-23.
- Tamulis, A., Tamulis, V., Quantum self-assembly and photoinduced electron tunneling in photosynthetic system of minimal living cell, Viva Origino 35, (2007) 66-72. http://www.origin-life.gr.jp/3502/3502066/3502066.html
- Füchslin, R., Maeke, T., Tangen, U., McCaskill, J. S., Evolving inductive generalization via genetic self-assembly, Advances in Complex Systems 9, (2006) 1-29.
- Pankau, W. M., Mönninghoff, S., von Kiedrowski, G., Thermostable and monoconjugable gold clusters with a dodecadentate thioether ligand gripper, Angewandte Chemie International Edition 45, (2006) 1889-92. http://www3.interscience.wiley.com/journal/117943443/tocgroup http://www3.interscience.wiley.com/cgi-bin/fulltext/112464043/PDFSTART
- Stanciewicz, J., Eckardt, L. H., Meeting review: Chembiogenesis 2005 and systems chemistry, Angewandte Chemie International Edition 45, (2006) 342-4. http://www3.interscience.wiley.com/journal/117943443/tocgroup http://www3.interscience.wiley.com/cgi-bin/fulltext/112224708/PDFSTART
- Ehrenfreund, P., Rasmussen, S., Cleaves, J., Chen, L., Experimentally tracing the key steps in the origin of life: The aromatic world, Astrobiology 6, (2006) 490-520.
- Sen, A., Nielsen, P. E., Unique properties of purine/pyrimidine asymmetric pna-DNA duplexes: Differential stabilization of pna-DNA duplexes by purines in the pna strand, Biophys. J. 90, (2006) 1329-37. http://www.biophysj.org/cgi/content/full/90/4/1329
- Nielsen, P. E., Goranovi_, G., Rasmussen, S., Can (non-biological) life be created de novo? , Biozoom 3, (2006). http://www.biokemi.org/biozoom/2006_3/bz_0306e.htm
- Tangen, U. et al., An electronically controlled microfluidics approach towards artificial cells., CompPlexUs 3, (2006) 48-57. http://dx.doi.org/10.1159/000094187 http://content.karger.com/ProdukteDB/produkte.asp?doi=10.1159/000094187
- Munteanu, A., Solé, R. V., Pattern formation in noisy self-replicating spots, International Journal of Bifurcations and Chaos 16, (2006) 3679-85. http://complex.upf.es/index.php?page=7
- Sardanyés, J., Solé, R. V., Ghosts in the origins of life? , International Journal of Bifurcations and Chaos 16, (2006) 2761-5. http://complex.upf.es/index.php?page=5
- Hanczyc, M. M., Toyota, T., Ikegami, T., Packard, N., Sugawara, V., Chemistry at the oil-water interface: Self-propelled oil droplets, J. Am. Chem. Soc, (2006).
- Maxwell, J., Boman, M., Springer, R. W., Narayan, J., Gnanavelu, S., Hyperbaric laser chemical vapor deposition of carbon fibers from the 1-alkenes, 1-alkynes, and benzene, J. Am. Chem. Soc. 128, (2006) 4405-13.
- Stahl, I., von Kiedrowski, G., Kinetic nmr titration: Including chemical shift information in the kinetic analysis of supramolecular reaction systems such as organic replicators, J. Am. Chem. Soc. 128, (2006) 14014-5. http://pubs.acs.org/journals/jacsat/index.html
- Tamulis, A., Tamulis, V., Graja, A., Quantum mechanical modeling of self-assembly and photoinduced electron transfer in pna based artificial living organism, Journal of Nanoscience and Nanotechnology 6, (2006) 965-73. http://www.ingentaconnect.com/content/asp/jnn/2006/00000006/00000004/art00008
- Munteanu, A., Solé, R. V., Phenotypic diversity and chaos in protocell dynamics, Journal of Theoretical Biology 240, (2006) 434-42. http://complex.upf.es/index.php?page=8
- Sardanyés, J., Solé, R. V., Bifurcations and phase transitions in spatially-extended two-member hypercycles, Journal of Theoretical Biology 243, (2006) 468-82. http://complex.upf.es/index.php?page=4
- Solé, R. V., Sardanyés, J., Diez, J., Mas, A., Information catastrophe in rna viruses through replication thresholds, Journal of Theoretical Biology 240, (2006) 353-9. http://complex.upf.es/index.php?page=6
- Rinkevicius, Z., Tamulis, A., Tamuliene, J., Beta-diketo structure for quantum information processing, Lithuanian Journal of Physics 46, (2006) 413-6. http://www.itpa.lt/LFD/Lfz/Turiniai/Turi2006.html#
- Tamuliene, J., Tamulis, A., Ziriakoviene, A., A., G., Quantum chemical design of two logical functions molecular device, Lithuanian Journal of Physics 46, (2006) 163-7. http://www.itpa.lt/LFD/Lfz/Turiniai/Turi2006.html#
- Tamulis, A., Tamulis, V., Self-assembling of artificial programmable cells and their growing and control, Mokslas ir Gyvenimas (Science and Life) 12, (2006) 32.
- Zhou, X., Jiang, Y., Kramer, K., Rasmussen, S., Ziock, H., Hydrodynamics for entropic systems: Space-time compression and pair correlation function approximation, Phys. Rev. E 74, (2006) 35701-1 - -4.
- Tamuliene, J., Balevicius, M. L., Search for sensitizer to peptide nucleic acid sequence with adenine and guanine bases, Viva Origino 34, (2006) 112-5. http://www.origin-life.gr.jp/3403/3403112/3403112.html
- Maxwell, J. et al., Process-structure map for diamond-like carbon fibers from ethene at hyperbaric pressures, Advanced Functional Materials 15, (2005) 1077-87.
- Kindermann, M., Stahl, I. R., M., Pankau, W. M., von Kiedrowski, G., Systems chemistry: Kinetic and computational analysis of a nearly exponential replicator, Angewandte Chemie International Edition 44, (2005) 6750-5. http://www3.interscience.wiley.com/journal/117943443/tocgroup http://www3.interscience.wiley.com/cgi-bin/fulltext/112097104/PDFSTART
- Nilsson, M., Hierarchical structures in smooth dynamical systems, Artificial Life 11, (2005) 493–512,. http://www.mitpressjournals.org/toc/artl/11/4
- Achilles, K., von Kiedrowski, G., Kinetic model studies on the chemical ligation of oligonucleotides via hydrazone formation., Bioorg. Med. Chem. Letters 15, (2005) 1229-33. http://www.sciencedirect.com/science/journal/0960894X http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6TF9-4F92406-1-1&_cdi=5221&_user=2873218&_orig=search&_coverDate=02%2F15%2F2005&_sk=999849995&view;=c&wchp;=dGLbVlb-zSkWz&md5;=28f3b94fb22e6989ebb62a5cf824e30e&ie;=/sdarticle.pdf
- Nilsson Jacobi , M., Rasmussen,S., Tunstrøm, K., Modeling the dynamics of a minimal protocell container, International Journal of Astrobiology 4, (2005) 79–89. http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid;=335356&fulltextType;=RA&fileId;=S1473550405002478
- Ehses, S., Ackermann, J., McCaskill, J. S., Optimization and design of oligonucleotide setup for strand displacement amplification, J Biochem Biophys Methods 63, (Jun 30, 2005) 170-86. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db;=PubMed&dopt;=Citation&list;_uids=15975661
- Goranovic, G., Sørensen, M. P., Brøns, M., Bruus, H., Electrohydrodynamic and shear-stress interfacial instability of two streaming viscous liquids inside a microfluidic channel, J. Fluid. Mech. Submitted, (2005).
- Tamuliene, J., Tamulis, A., Quantum mechanical investigations of self-assembled system consisting of peptide nucleic acid, sensitizer, and lipid precursor molecules, Lithuanian Journal of Physics, 45, (2005) 167-74. http://www.itpa.lt/LFD/Lfz/Turiniai/Turi2005.html
- Gillooly, J. F. et al., The metabolic basis of whole-organism rna and phosphorous content, Proc. Natl. Acad. Sci. USA 102, (2005) 11923-7.
- Savage, V. M. et al., The predominance of quarter-power scaling in biology, Functional Ecology 18, (2004) 257-82.
- Lichtensteiger , L., the need to adapt and its implications for embodiment, Lecture Notes in Computer Science LNCS 3139, (2004) 98-106.
- Tamuliene, J., Tamulis, A., Kulys, J., Electronic structure of dodecyl syringate radical suitable for esr molecular quantum computers, Nonlinear Analysis: Modeling and Control 9, (2004) 185-96. http://www.lana.lt/journal/issues.php
- Rasmussen, S., Chen, L., Stadler, P. F., Stadler, B., Proto-organism kinetics: Evolutionary dynamics of lipid aggregates with genes and metabolism, Orig. Life Evol. Life. 34, (2004) 171-80.
- Rasmussen, S. et al., Transitions between nonliving and living matter, Science 303, (2004) 963-5.
- Rasmussen, S. et al., Living and nonliving matter, Science (Letters) 305, (2004) 41-3.
- Tamulis, A., Tamuliene, J., Tamulis, V., Ziriakoviene, A., Quantum mechanical design of molecular computers elements suitable for self-assembling to quantum computing living systems, Solid State Phenomena, Scitec Publications, Switzerland 97-98, (2004) 175-80.
- Packard, N. H., Shaw, R. (2005). http://arxiv.org/cond-mat/0412626
Books
- Bedau, M. A., Cleland, C., The nature of life: Classical and contemporary perspectives from philosophy and science (New York: Cambridge University Press, In press, 2009), pp.
- Bedau, M. A., Parke, E. C., The prospect of protocells: Social and ethical implications of recreating life (Cambridge: MIT Press, In press, 2009), pp.
- Baragona, R., Battaglia, F., Poli, I., Evolutionary statistics (Springer, 2008), pp. accepted.
- Baragona, R., Battaglia, F., Poli, I., Evolutionary statistics for high dimensional data (Springer, 2008), pp.
- Bedau, M. A., Humphreys, P., Emergence: Contemporary readings in philosophy and science (Cambridge: MIT Press, 2008), pp. http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid;=11341
- Lindgren, K., Information theory for complex systems — lecture notes. Chalmers university of technology, göteborg, sweden (To be submitted after revision and extension for publication as a book, 2008), pp. ../../../../Global_Publications/InformationTheory-LectureNotes-Lindgren.pdf?ver=0&helpview;=238124&ftype;=0
- Rasmussen, S. et al., Protocells: Bridging nonliving and living matter (Cambridge: MIT Press, In press, 2008), pp. http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid;=11630
- Rasmussen, S., Mangalagiu, D., Initiativ for videnskab, teknologi og policy. Mouritsen, O. G., Ed., Viljen til visdom (2008), pp.
- Solé, R. V., Rasmussen, S., Bedau, M. A., Towards the artificial cell. Theme issue of philosophical transactions of the royal society b, Philosophical transactions of the royal society b special issue (Philosophical Transactions of the Royal Society B, 2007), pp. 1723-925. http://journals.royalsociety.org/content/n1p715478p27/
Theses
- Chemnitz, S., Ph.D., "Hybride Mikrofluidiksysteme als programmierbare Umgebung zur Untersuchung biochemischer Modellreaktionen." Univ. Saarland, Advisors: McCaskill, J. S., Seidel, H.(2006).
- Ehses, S., Ph. D., "Isothermale in vitro Selektion und Amplifikation zur Untersuchung von Evolutionsvorgängen" Ruhr University Bochum, Advisors: McCaskill, J. S., Kiedrowski, G. v. (2005).
- Rücker, T., Ph.D., "Biomolekulare Informationsverarbeitung in vernetzten Mikroflussreaktoren." University of Bonn, Advisors: McCaskill, J. S., Famulok, M. (2005).
- Lichtensteiger, L., Ph.D., "Bodies That Think Quickly and Learn Fast: On the Interdependence of Morphology and Control for Intelligent Behavior." (2004) PhD Thesis, University of Zurich, Switzerland.
Book Sections
- Sardanyés, J., The hypercycle: From molecular to ecosystems dynamics, in Landscape ecology research trends. (2008) pp. Chapter 6, 1-12. http://complex.upf.es/index.php?page=22
- Bedau, M. A., The evolution of complexity, in Mapping the future of biology: Evolving concepts and theories In Thomas Pradeu, A. B., and Michel Morange, eds., Ed. (Berlin: Springer, In press, 2008).
- Tamulis, A., Tamulis, V., Ziock, H., Rasmussen, S., Influence of water and fatty acid molecules on quantum photoinduced electron tunnelling in photosynthetic systems of pna based self-assembled protocells”, chapter 2, in Multi-scale simulation methods for nanomaterials R., R., Mohanty, S., Eds. (John Wiley & Sons, Inc.; New Jersey, 2008) pp. 9-28.
- Tamulis, A., Tamulis, V., Ziock, H., Rasmussen, S., Influence of water and fatty acid molecules on quantum photo-induced electron tunneling in self-assembled photosynthetic centers of minimal protocells, chapter 2, in Multiscale simulation methods for nanomaterials Ross, R. B. a. M., S., Ed. (Wiley, 2008) pp. Chapter 2.
- Monnard, P. A., The dawn of the rna-world: Non-enzymatic rna polymerization from mono-ribonucleotides under prebiotically plausible conditions, in Prebiotic evolution and astrobiology Lazcano, A. a. W., J.T.F., Ed. (Landes Bioscience, 2008) pp. Chapter 10. in press
- Bedau, M. A. a. M. T., Social and ethical implications of artificial cells, in The prospect of protocells: Social and ethical implications of the recreation of life In Bedau, M. A. a. P., E. C. , eds., Ed. (Cambridge: MIT Press, In press, 2008).
- Parke, E. C., Bedau, M. A., The precautionary principle and its critics, in The prospect of protocells: Social and ethical implications of the recreation of life In Bedau, M. A., Parke, E. C. e., Eds. (Cambridge: MIT Press, In press, 2008).
- Parke, E. C., Bedau, M. A., Introduction to the prospect of protocells, in The prospect of protocells: Social and ethical implications of the recreation of life In Bedau, M. A., Parke, E. C. e., Eds. (Cambridge: MIT Press, In press, 2008).
- Solé, R. V. et al., Models of protocell replication, in Protocells: Bridging living and non-living matter Rasmussen, S., al., e., Eds. (MIT Press, in press, 2008). http://complex.upf.es/index.php?page=22
- Parke, E. C., Bedau, M. A., Social and ethical issues concerning protocells, in Protocells: Bridging nonliving and living matter In Rasmussen, S., Bedau, M. A., Chen, L., Deamer, D. , Krakauer, D. C. , Packard, N. H. , Stadler, P. F. , eds., Eds. (Cambridge: MIT Press, In press, 2008). http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid;=11630
- Rasmussen, S. et al., Assembly of a minimal protocell, in Protocells: Bridging nonliving and living matter Rasmussen, S. et al., Eds. (in MIT Press, in press, 2008). http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid;=11630, http://www.worldcat.org/oclc/182913278&referer;=brief_results
- Rasmussen, S., Bedau, M. A., McCaskill, J. S., Packard, N. H., A roadmap to protocells, in Protocells: Bridging nonliving and living matter In Rasmussen, S., Bedau, M. A., Chen, L., Deamer, D. , Krakauer, D. C. , Packard, N. H. , Stadler, P. F., eds., Eds. (Cambridge: MIT Press. In press., 2008). http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid;=11630
- Woodruff, W. H., Energetics, energy flow, and scaling in life and protolife, in Protocells: Bridging nonliving and living matter Rasmussen, S., al., e., Eds. (2008). in press
- Nilsson-Jacobi, M., Hierarchical dynamics, in Springer's encyclopedia on complex systems. (Springer (to appear), 2008). No link available due to copyright issues
- Bedau, M. A., Une vue fonctionnelle de la cellule vivante minimale (a functional view of minimal cellular life), in Comment définir la vie? In H. Bersini and J. Reisse, e., Ed. (Paris: Vuibert, 2007) pp. 5-13. http://www.decitre.fr/livres/Comment-definir-la-vie-Les-reponses-de-la-biologie-de-l-intelligence-artificielle-et-de-la-philosophie-des-sciences.aspx/9782711748655
- Bedau, M. A., What is life?, in A companion to the philosophy of biology In S. Sarkar and A. Plutynski, e., Ed. (New York: Blackwell, 2007) pp. 455-71. http://www.blackwellpublishing.com/book.asp?ref=9781405125727&site;=1
- Bedau, M. A., Artificial life, in Handbook of the philosophy of biology In M. Matthen and C. Stephens, e., Ed. (Amsterdam: Elsevier, 2007) pp. 585-603. http://www.elsevier.com/wps/find/bookdescription.cws_home/711119/descript
- Jiang, Y., Travis, B., Knutson, C., Zhang, J., Weronski, P., Numerical methods for protocell simulations, in Protocells: Bridging nonliving and living matter Rasmussen, S. et al., Eds. (Cambridge: MIT Press, 2007). in press
- McCaskill, J. S., Evolutionary microfluidic complementation towards artificial cells, in Protocells: Bridging nonliving and living matter Rasmussen, S. et al., Eds. (MIT Press, 2007). http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid;=11630
- Mouritsen, O. G., Jakobsen, A. F., Forming the essential template for life: The physics of lipid self-assembly, in Protocells: Bridging nonliving and living matter Rasmussen, S. et al., Eds. (MIT Press, in press, 2007). http://mitpress.mit.edu/catalog/item/default.asp?ttype=2&tid;=11630
- Buchanan, A., Gazzola, G., Bedau, M. A., Evolutionary design of a model of self-assembling chemical structures, in Systems self-assembly: Multidisciplinary snapshots In N. Krasnogor, S. G., D. Pelta and J.L. Verdegay, eds., Ed. (Amsterdam: Elsevier, 2007) pp. 79-100. Elsevierhttp://www.elsevier.com/wps/find/bookdescription.cws_home/714277/description#description
- Serra, R., Carletti, T., Poli, I., Filisetti, A., The growth of populations of protocells, in Towards a general theory of emergence G., M., A., A. P., Eds. (Singapore: World Scientific, 2007) pp. in press.
- Pankau, W.-M. et al., Replicatable nanoscaffolded multimodularity – a chemical perspective, in Functional synthetic receptors Hamilton, A., Schrader, T., Eds. (Wiley, 2006).
- Bedau, M. A. et al., Evolutionary design of a ddpd model of ligation, in Lecture notes in computer science 3871, V., Ed. (Springer, 2005) pp. 201-12.
Conference Proceedings
- Miyashita, S., Hotz, M. P. E., in IEEE International Conference on Mechatronics (ICM). (2007). in press
- Rasmussen, S., Mangalagiu, D., Ziock, H., How do European and U.S. Energy sectors address climate change? paper presented at the 2008 Academy of Management Annual Meeting, Anaheim, California, USA 2008.
- Serra, R., Villani, M., A CA model of spontaneous formation of concentration gradients paper presented at the ACRI 2008, Berlin: Springer Lecture Notes in Computer Science 2008.
- Kelly, C., McMullin, B., O’Brien, D., Enrichment of interaction rules in a string-based artificial chemistry paper presented at the The Eleventh International Conference on the Simulation and Synthesis of Living Systems, ALIFE-08, Winchester 2008. ../../../../Global_Publications/kellyALifeXI.pdf?ver=0&helpview;=238124&ftype;=0
- Forlin, M., Poli, I., De March, D., Slanzi, D., Serra, R., Model-based evolutionary designs for biological complex systems experimentation paper presented at the European Conference on Complex Systems JECCS08 2008.
- Forlin, M., Poli, I., De March, D., Slanzi, D., Serra, R., Model-based evolutionary designs for biological complex systems experimentation paper presented at the European Conference on Complex Systems, JECCS08 2008. http://www.jeruccs2008.org/
- Slanzi, D., Forlin, M., De March, D., Poli, I., Probabilistic networks for high dimensional biochemical systems paper presented at the European Conference on Complex Systems, JECCS08 2008. http://www.jeruccs2008.org
- Rasmussen, S., Mangalagiu, D., Ziock, H., How do european and u.S. Energy sectors address climate change? : A comparative study of the role of corporate social responsibility paper presented at the International Energy Workshop, Paris 2008.
- Packard, N., Exploration and exploitation in complex experimental designs paper presented at the MITSOCS Mathematics In The Science Of Complex Systems, Venice 2008.
- Poli, I., Complex systems experimental designs paper presented at the MITSOCS, Mathematics In The Science Of Complex Systems 2008.
- Tamulis, A., Quantum mechanical interpretation of origin of life paper presented at the Proceedings of annual science conference of Faculty of Natural Sciences of Vilnius University 2008.
- Slanzi, D., Poli, I., De March, D., Forlin, M., Bayesian networks for high-dimensional experiments paper presented at the Proceedings of Bayesian Analysis of High dimensional Data, CRiSM Workshop 2008. http://www2.warwick.ac.uk/fac/sci/statistics/crism/news/workshops/
- De March, D., Forlin, M., Slanzi, D., Poli, I., Predictive neural networks for designing experiments paper presented at the Proceedings of Wivace 2008 2008.
- Serra, R., Carletti, T., Poli, I., Filisetti, A., Synchronization phenomena in internal reaction models of protocells paper presented at the Proceedings of Wivace 2008 2008.
- Carta, D. et al., Functionalization of organosilane substrate to bind biomolecules: Aging paper presented at the VI workshop on Sol-Gel, Lecce 2008.
- Miyashita, S., Hadorn, M., Eggenberger Hotz, P., Water floating self-assembling agents paper presented at the The 1st KES Symposium on Agent and Multi-Agent Systems, Wroclaw, Poland 2007. in press
- Monnard, P. A., Ziock, H., Eutectic phase in water-ice: A self-assembled environment conducive to metal-catalyzed non-enzymatic rna polymerization paper presented at the accepted Topical review for the special issue of Chemistry and Biodiversity, XIII ICBIC 2007.
- McMullin, B., Kelly, C., O’Brien, D., Multi-level selectional stalemate in a simple artificial chemistry paper presented at the Advances in Artificial Life, 9th European Conference (ECAL-07), Lisbon 2007. ../../../../Global_Publications/ecal-2007-camera-ready.pdf?ver=0&helpview;=238124&ftype;=0
- Carletti, T., Fanelli, D., Evolution of a population of protocells: Emergence of species paper presented at the BIOMAT 2006: International Sysposium on Mathematical and Computational Biology 2007.
- Filisetti, A., Serra, R., Carletti, T., Poli, I., Villani, M., Synchronization phenomena in protocell models paper presented at the BIOMAT 2007, International Symposium on Mathematical and Computational Biology 2007.
- Tamulis, A., Tamulis, V., Quantum mechanical modeling of artificial minimal living cells paper presented at the book of abstracts of 37th Lithuanian national physics conference 2007.
- Tamulis, A., Tamulis, V., Quantum mechanical self-assembling of artificial minimal cells and control by molecular electronics and spintronics logical devices paper presented at the book of abstracts of COST D27 Final Evaluation conference “Prebiotic Chemistry and Early Evolution”, Inter – University Center, Dubrovnik, Croatia 2007.
- Kelly, C., McMullin, B., O’Brien, D., Mitchell, G. G., P., S. d. F., The evolution of complexity in a multi-level artificial chemistry paper presented at the European Conference on Complex Systems, ECCS-07, Dresden 2007. http://cssociety.org/tiki-index.php?page=ECCS07-219
- Forlin, M., Poli, I., De March, D., Packard, N., Serra, R., Evolving the experimental design for amphiphilic systems paper presented at the European Symposium on Nature-inspired Smart Information Systems 2007.
- Rasmussen, S., Mangalagiu, D., Ziock, H., Bollen, J., Bollen, J., Collective intelligence for decision support in very large stakeholder networks : The future us energy system paper presented at the IEEE Symposium on Artificial Life, ALIFE '07 2007.
- Kelly, C., McMullin, B., O’Brien, D., Mitchell, G. G., P., S. d. F., Preliminary steps toward artificial protocell computation paper presented at the International Conference on Morphological Computation 2007. ../../../../Global_Publications/morph-comp-2007.pdf?ver=0&helpview;=238124&ftype;=0
- Miyashita, S., Hadorn, M., Eggenberger Hotz, P., Tribolon – water floating self-assembling units paper presented at the International Conference on Morphological Computation, Venice Italy 2007. in press
- Serra, R., Carletti, T., Poli, I., Surface–reaction models of protocells paper presented at the International Symposium on Mathematical and Computational Biology BIOMAT2006 2007.
- Tangen, U., From evolving software towards models of dynamically self-assembling processing systems paper presented at the Proceedings of ECCS 2006 2007.
- Fellermann, H., Rasmussen, S., Ziock, H., Solé, R., A simple model of self-replicating protocells paper presented at the Proceedings of the 4th Annual Conference on Foundations of Nanoscience 2007.
- Miyashita, S., Hadorn, M., Eggenberger Hotz, P., Water floating active units paper presented at the ROBOMEC 2007, Japan 2007. in press
- Forlin, M., De March, D., Slanzi, D., Poli, I., A predictive evolutionary approach to design biochemical experiments, risk and prediction paper presented at the SIS 2007.
- Slanzi, D., Poli, I., De March, D., Forlin, M., Bayesian networks for detecting relevant variable interactions for biochemical experiments, risk and prediction paper presented at the SIS 2007.
- Slanzi, D., Trevisan, M., Villanova, L., Palù, G., Poli, I., Bayesian analysis of cytomegalovirus infection from microarray data, risk and prediction paper presented at the SIS 2007.
- Chemnitz, S., Tangen, U., Wagler, P. F., Maeke, T., McCaskill, J. S., Electronically programmable membranes for improved biomolecule handling in micro-compartments on-chip paper presented at the 9th International Conference on Microreaction Technology (IMRET 9) 2006.
- Eriksson, A., Görnerup, O., Nilsson Jacobi, M., Rasmussen, S., Quasi-species and aggregate dynamics paper presented at the Artificial Life X, Proceedings of the tenths conference on the simulation and synthesis of living systems 2006.
- Carletti, T., Fanelli, D., Evolution of a population of protocells: Emergence of species paper presented at the BIOMAT 2006: International Sysposium on Mathematical and Computational Biology 2006.
- Serra, R., Carletti, T. P., I., Surface–reaction models of protocells paper presented at the BIOMAT 2006: International Sysposium on Mathematical and Computational Biology 2006. World Scientific Publishing Company(http://eproceedings.worldscinet.com/9789812708779/9789812708779_0003.html).
- Tamulis, A., Tamulis, V., Quantum processes in photosynthetic systems of artificial minimal cells paper presented at the book of abstracts of conference “Chembiogenesis 2006”, Barcelona, Spain 2006.
- Tamulis, A., Abstract of presentation „basic questions about the origin of life“, question 9: Artificial life paper presented at the book of abstracts of International School on Complexity – 4th Course, Italy, Erice 2006.
- Tamulis, A., Tamulis, V., Measure of complexity and photoinduced electron tunneling in photosynthetic systems of pna based self-assembled protocells paper presented at the book of abstracts of Third Annual Meeting COST Action P10 Physics of Risk & Workshop on Complex System Science, Vilnius Lithuania 2006. http://physrisk.itpa.lt/index.php?option=com_content&task;=view&id;=29&Itemid;=56
- Theis, M., Gazzola, M., Forlin, M., Poli, I., Hanczyc, M., Bedau, M., Optimal formulation of complex chemical systems with a genetic algorithm paper presented at the ECCS06 online Proceedings 2006. http://sbsxnet.sbs.ox.ac.uk/complexity/complexity_PDFs/ECCS06/Conference_Proceedings/Conference%20proceedings.pdf
- Goranovic, G., Rasmussen, S., Nielsen, P. E., Artificial life forms in microfluidic computers paper presented at the Proc. MicroTAS 2006, Tokyo Japan 2006. http://www.memphys.sdu.dk/publication/show_attachment.php?File_ID=126.
- Nilsson Jacobi, M., Quotient manifold projections and hierarchical dynamics paper presented at the Proceeding of ECCS06 2006. http://arxiv.org/abs/math-ph/0606016/
- Eriksson, A., Görnerup, O., Nilsson Jacobi, M., Rasmussen, S., Quasi-species and aggregate dynamics paper presented at the Proceedings of ALife X 2006. http://arxiv.org/abs/q-bio.PE/0511044/
- Schroer, J. P., Lindgren, K., Simulation of higher-order self-assembly paper presented at the Proceedings of ECCS06 2006. ../../../../Global_Publications/selfassembly_ECCS06_Chalmers.pdf?ver=0&helpview;=238124&ftype;=0
- Kelly, C., McMullin, B., O'Brien, D., On protocell “computation”, paper presented at the Proceedings of the European Conference on Complex Systems (ECCS-06), Oxford 2006. http://cssociety.org/tiki-index.php?page=ECCS06-152
- Miyashita, S., Hotz, M. P. E., Morphogenetic evolution of 3d sheets exploiting a spatial constraint paper presented at the Proceedings of the IEEE World Congress on Computational Intelligence (CEC) 2006.
- Carletti, T., Protocells under the chemoton hypothesis may evolve paper presented at the Proceedings of Wiva 3 2006. (http://laral.istc.cnr.it/wiva3/atti/wiva3/home.htm)
- Serra, R., Carletti, T., Poli, I., Emergent synchronization in protocell models paper presented at the Proceedings of Wiva 3 2006. http://laral.istc.cnr.it/wiva3/atti/wiva3/presentazioni/SerraCarlettiPoli.pdf
- Forlin, M., Poli, I., De March, D., Packard, N., Serra, R., Evolving complex biochemical experimentation paper presented at the Proceedings of Wiva 4 2006. (http://laral.istc.cnr.it/wiva3/atti/wiva3/home.htm
- Serra, R., Carletti, T., Poli, I., Emergent synchronization in protocell models paper presented at the Proceedings of Wiva 5 2006.
- Gazzola, G., Buchanan, A., Packard, N. H., Bedau, M. A., Catalysis by self-assembled structures in emergent reaction networks paper presented at the submitted to ECAL2007 for publication in LNCS 2006.
- Tamuliene, T., Tamulis, A., Nielsen, P., Quantum mechanical investigations of flexibility of e and e(ag) nucleobases paper presented at the book of abstracts of 36th Lithuanian National Physics Conference, Vilnius 2005.
- Tamulis, A., Tamulis, V., Variety of self-replicating complex living system based on quantum information paper presented at the book of abstracts of conference “Chembiogenesis 2005”, Venice, Italy 2005.
- Tangen, U., Wagler, P.F., Chemnitz, S, Goranovic, G, Maeke, T., McCaskill, J. S., An electronically controlled microfluidics approach towards artificial cells paper presented at the European Conference on Complex Systems 2005. http://complexite.free.fr/ECCS05/proceedingsECCS05.pdf
- McCaskill, J. S., Ehses, S. et al., Stationary chemical gradient reactors in the search for artificial cells paper presented at the MicroTas 2005 Boston 2005.
- Wagler, P. F. et al., Dynamical multiphase structures in the microsystem approach to artificial cells paper presented at the MicroTas 2005 Boston 2005.
- Achim, V. et al., Electrohydrodynamic stability analysis of two-phase flows in confining microsystems paper presented at the Proc. Computational Problems in Physics (CPiP) workshop 2005, Helsinki, Finland 2005.
- Wagler, P., Tangen, U, Maeke, T, Chemnitz, S, Jünger, M and McCaskill, J.S., Molecular systems on-chip (msoc) - steps forward for programmable biosystems paper presented at the SPIE: Smart Structures and Materials 2004 (San Diego, CA, USA) 2005.
- Tamuliene, J., Balevicius, M. L., Tamulis, A., Search of suitable sensitizers paper presented at the book of abstracts International conference on “ Structure and Spectroscopy” held in Vilnius , September 2004.
- Goranovic, G., Sørensen, M. P., Brøns, M., Bruus, H., Electrohydrodynamic stability of two –phase microflows, paper presented at the Proc. MicroTAS 04, Malmö, Sweden 2004.
- Tarapore, D., Lungarella, M., Gomez, G., Fingerprinting agent-environment interaction via information theory paper presented at the Proc. of the 8th Conf. on Intelligent Autonomous Systems (IAS'04) 2004.
- Helvik, T., Lindgren, K., Nordahl, M.G., Local information in one-dimensional cellular automata paper presented at the Proceedings for ACRI-2004, Cellular Automata: 6th International Conference on Cellular Automata for Research and Industry 2004. http://books.google.com/books?hl=sv&lr;=&id;=qQs6hyZdzVkC&oi;=fnd&pg;=PA121&ots;=oPT6oBX7Tx&sig;=NRl7ulhSBcbMJLIv3e4zgSCI2Qs
- Lindgren, K., Eriksson, A., Eriksson, K.-E., Flows of information in spatially extended chemical dynamics paper presented at the Proceedings for Artificial Life 9 2004. uploaded on ../../../../Global_Publications/ALife9_Lindgren_2004.pdf?ver=0&helpview;=238124&ftype;=0
- Serra, R., Carletti, T., Poli, I., Villani, M., Filisetti, A., Conditions for emergent synchronization in protocells paper presented at the European Conference on Complex Systems ECCS07. Dresden (http://vwitme011.vkw.tu-dresden.de/TrafficForum/dresden/oral.html)
Manuscripts or Incomplete References
- Caschera, F. et al., Predictive exploration of drug formulation space using model-based high throughput experimentation. (2008).
- Goranovic, G., Sorensen, M., Brøns, M., Bruus, H., Interfacial instabilities of two viscous liquids in couette-poiseuille flow in the limit of small reynolds numbers. (2008), vol. preprint.
- Pepelyshev, A., Poli, I., Melas,V., Uniform coverage designs for mixture experiments. (2008), vol. submitted.
- Carletti, T., Stability, mutations and evolution in a population of chemotons. (2007), vol. preprint.
Reports
- Tangen, U., “Declaration of the external interface between the ng_biopro-software and another external control-program, version 0.49 enhanced command 's'” (2008). https://134.147.93.67/bmcmyp/Data/PACE/Working_Area/Movement_simulator/BioPRO_Software/ext_interface.pdf
- Serra, R., Carletti, T., Poli, I., Villani, M., Filisetti, A., “Conditions for emergent synchronization in protocells” (2008).
- Serra, R., Villani, M., “Spontaneous formation of density gradiente” (2008).
- Bagheri-Maurer, J., Wagler, P. F., “How to fill fpfa chip modules, version 30 may '07: Operations-manual (how to use the fpfa and biomodule resp.)” (2007). https://134.147.93.67/bmcmyp/Data/PACE/Working_Area/Movement_simulator/BioPRO_Software/FPFA_use_manual.pdf
- Maeke, T., “Hardware-manual of bio@fox, biopro-hardware-manual revision 0.13” (2007). https://134.147.93.67/bmcmyp/Data/PACE/Working_Area/Movement_simulator/BioPRO_Software/biopro_hw_manual.pdf
- Tangen, U., “User's-manual of biopro-software, users- and programmers-manual version 0.2” (2007). https://134.147.93.67/bmcmyp/Data/PACE/Working_Area/Movement_simulator/BioPRO_Software/biopro_user_manual.pdf
- Bedau, M. et al., “Evolutionary design of a ddpd model of ligation” (2006).
- Forlin, M. et al., “Modelling evolutionary experimental designs for complex chemical systems” (2006).
- Serra, R., Carletti, T., Poli, I., “Synchronization phenomena in surface-reaction models of protocells” (2006).
- Agostinelli, C., Cucina, D., Poli, I., “A simulation platform for an electric field particle dynamics (efpd)” (Dep. of Statistics, Univ. Ca’ Foscari of Venice, 2005).
- Minerva, T., Poli, I., “Evo-stat: Evolutionary statistical modeling, technical report and software, dep. Of social, cognitive and quantitative science” (Univ. of Modena and Reggio Emilia, 2005).