References
[1] a) T. Ganti, in Chemoton Theory, Vol. I - Theoretical Foundations of Fluid Machineries, Kluwer Academic/Plenum Publishers, New York 2003; b) T. Ganti, in Chemoton Theory, Vol. I - Theory of Living Systems, Kluwer Academic/Plenum Publishers, New York 2003.[2] R. Breslow publications at http://www.columbia.edu/cu/chemistry/breslow/.
[3] Csendes, T., Kybernetes 1984, 13, 79-85.
[4] J. Macia, R. V. Sole, Journal of Theoretical Biology 2007, 245, 400-410.
[5] S. Rasmussen, L. Chen, M. Nilsson, S. Abe, Artificial Life 2003, 9, 269-316.
[6] S. Kauffman, in Investigations, Oxford University Press, 2000.
[7] E. Szathmary; J.M. Smith J.M., Nature 1995, 374, 227-232.
[8] G. von Kiedrowski, Angew. Chem. 1986, 98, 932-934; G. von Kiedrowski, Angew. Chem. Int. Ed. 1986, 25, 932-935.
[9] D. Sievers, G. von Kiedrowski, Nature 1994, 369, 221-224.
[10] a) T. Tjivikua, P. Ballester, J. Rebek Jr., J. Am. Chem. Soc. 1990, 112, 1249-1250; b) A. Terfort, G. von Kiedrowski, Angew. Chem. 1992, 104, 626-628; Angew. Chem. Int. Ed. 1992, 31, 654-656.
[11] a) D. H. Lee, J. R. Granja, J. A. Martinez, K. Severin, M. R. Ghadiri, Nature 1996, 382, 525-528; b) K. Severin, D. H. Lee, J. A. Martinez, M. R. Ghadiri, Chem. Eur. J. 1997, 3, 1017-1024; c) S. Yao, I. Ghosh, R. Zutshi, J. Chmielewski, J. Am. Chem. Soc. 1997, 119, 10559-10560.
[12] G. von Kiedrowski, Bioorg. Chem. Front. 1993, 3, 113-146.
[13] A.Luther, R. Brandsch, G. von Kiedrowski, Nature 1998, 396, 245-248.
[14] a) B. Wang, I. O. Sutherland, Chem. Commun. 1997, 1495-1496; b) V. C. Allen, D. Philp, N. Spencer, Org. Lett. 2001, 3, 777-780.
[15] S. Yao, I. Gosh, R. Zutshi, J. Chmielewski, Nature 1998, 396, 447-450.
[16] M. Kindermann, I. Stahl, M. Reimold, W. M. Pankau, G. von Kiedrowski, Angew. Chem. Int. Ed. 2005, 44, 6750-6755; Angew. Chem. 2005, 117, 6908-6913.
[17] M. Matzen, G. von Kiedrowski, unpublished
[18] R. Naylor, P.T. Gilham, Biochemistry 1966, 5, 2722-2728.
[19] reviews: a) B. G. Bag, G. von Kiedrowski, Pure Appl. Chem. 1996, 68, 2145-2152; b) A. Robertson, A. J. Sinclair, D. Philp, Chem. Soc. Rev. 2000, 29, 141-152.
[20] G. von Kiedrowski, B. Wlotzka, J. Helbing, M. Matzen, S. Jordan, Angew. Chem. 1991, 103, 456-459; Angew. Chem. Int. Ed. 1991, 30, 423-426.
[21] E. Szathmáry, I. Gladkih, J. theor. Biol. 1989, 138, 55-58.
[22] G. von Kiedrowski, E. Szathmáry, Selection 2000, 1, 173-179.
[23] J. S. McCaskill, G. J. Bauer, Proc. Natl. Acad. Sci. USA 1993, 90, 4191-4195.
[24] S. Lifson, H. Lifson, J. theor. Biol. 1999, 199, 425-433.
[25] G. von Kiedrowski, in Gene, Neurone, Qubits & Co. (Eds.: D. Ganten et al.) Gesellschaft Deutscher Naturforscher und Ärzte, S. Hirzel Verlag, Stuttgart, 1998, 120, 123-145.
[26] J. Stankiewicz, L. H. Eckardt, Angew. Chem. Int. Ed. 2006, 45, 342-344; Angew. Chem. 2006, 118, 350-352.
[27] reviews: a) P. R. Selvin, Methods Enzymol. 1995, 246, 300-334; b) A. Holzwarth, Methods Enzymol. 1995, 246, 334-362; c) R. M. Clegg, Methods Enzymol. 1992, 211, 353-388; d) R. H. Fairclough, C. R. Cantor, Methods Enzymol. 1978, 48, 347-379.
[28] a) S. Tyagi, F. R. Kramer, Nature Biotech. 1996, 14, 303-308; b) S. Tyagi, D. P. Bratu, F. R. Kramer, Nature Biotech. 1998, 16, 49-53.
[29] a) S. S. Ghosh, P. S. Eis, K. Blumeyer, K. Fearon, D. P. Millar, Nucleic Acids Res. 1994, 22, 3155-3159; b) K. P. Bjornson, M. Amaratunga, K. J. M. Moore, T. M. Lohman, Biochemistry 1994, 33, 14306-14316; c) T. A. Perkins, D. E. Wolf, J. Goodchild, Biochemistry 1996, 35, 16370-16377; d) K. K. Singh, R. Parwaresch, G. Krupp, RNA 1999, 5, 1348-1356.
[30] A. Jenne, J. S. Hartig, N. Piganeau, A. Tauer, D. A. Samarsky, M. R. Green, J. Davies, M. Famulok, Nature Biotech. 2001, 19, 56-61.
[31] A. Berkessel, R. Riedl, Angew. Chem. 1997, 109, 1518-1520; Angew. Chem. Int. Ed. 1997, 36, 1481-1483.
[32] P. I. H. Bastiaens, T. M. Jovin, Proc. Natl. Acad. Sci. USA 1996, 93, 8407-8412.
[33] N. G. Dolinnaya, N. I. Sokolova, O. I. Gryaznova, Z. A. Shabarova, Nucleic Acids Res. 1988, 16, 3721-3738.
[34] a) R. Lohrmann, L. E. Orgel, Science 1968, 161, 64-66; b) N. G. Dolinnaya, A. V. Tsytovich, V. N. Sergeev, T. S. Oretskaya, Z. A. Shabarova, Nucleic Acids Res. 1991, 19, 3073-3080.
[35] D. Sievers, G. von Kiedrowski, Chem. Eur. J. 1998, 4, 629-641.
[36] D. Pörschke, M. Eigen, J. Mol. Biol. 1971, 62, 361-381.
[37] J. Bülle, Thesis, Ruhr-Universität Bochum (D) 2000, http://www-brs.ub.ruhr-uni-bochum.de/netahtml/HSS/Diss/BuelleJan/diss.pdf.
[38] K. Lenssen, P. Jantscheff, G. von Kiedrowski, U. Massing, ChemBioChem 2002, 3, 852-858.
[39] A. Dupont, J Eastoe, M. Murray, L. Martin, Langmuir 2004, 20, 9953-9959.
[40] F. Natatsugi, S. Sasaki, M. Maeda, Journal of Fluorine Chemistry 1992, 56, 373-383.
[41] V. Patzke, PhD thesis, Ruhr-Universität Bochum, 2005 http://www-brs.ub.ruhr‑uni‑ochum.de/netahtml/HSS/Diss/PatzkeVolker/Inhaltsverzeichnis.pdf.
[42] V. Patzke, J.S. McCaskill, G. von Kiedrowski, Manuskript for ANIE in preparation.
[43] N. C. Seeman, Nature 2003, 421, 427 – 431; U. Feldkamp, C. M. Niemeyer, Angew. Chem. Int. Ed. 2006, 45, 1856-1876; F. C. Simmel, Angew. Chem. Int. Ed. 2008, 47, 2–6.
[44] J. Zimmermann, M. P. J. Cebulla, S. Mönninghoff, G. von Kiedrowski, Angew. Chem. 2008, 120, 3682 – 3686; Angew. Chem. Int. Ed. 2008, 47, 3626 – 3630.
[45] U. Feldkamp, S. Saghafi, W. Banzhaf, H. Rauhe, “DNA Sequence Generator: A Program for the construction of DNA sequences”, can be found under http://www.cs.mun.ca/~banzhaf/molcomp.html#DNASequenceGenerator.
[46] W. M. Pankau, S. Mönninghoff, G. von Kiedrowski, Angew. Chem. 2006, 118, 1923 –1926; Angew. Chem. Int. Ed. 2006, 45, 1889-1891; S. Mönninghoff, PhD thesis, Ruhr-Universität Bochum, 2008.
[47] L.H. Eckardt, K. Naumann, W.M. Pankau, M. Rein, M. Schweitzer, N. Windhab, G. von Kiedrowski, Nature 2002, 420, 286.
[48] G. von Kiedrowski, L.H. Eckardt, K. Naumann, W.M. Pankau, M. Reimold, M. Rein, Pure Appl. Chem. 2003, 75, 609-619.
[49] http://www.cost.esf.org/index.php?id=1543
[50] http://www.beilstein-institut.de/bozen2008/Final_Circular_2008.pdf
[51] http://www.esf.org/index.php?id=4566
[52] I. Stahl, G. von Kiedrowski, J. Am. Chem. Soc. 2006, 128, 14014-5.
[53] I. Stahl, G. von Kiedrowski, Rubin 01/06: http://www.ruhr-uni-bochum.de/rubin/rbin1_06/pdf/beitrag8.pdf
[54] E. Hayden, G. von Kiedrowski, N. Lehman, Angew. Chem. Int. Ed., in press
[55] M. Mauksch, S.B. Tsogoeva, I.M. Martynova, S. Wei, Angew. Chem. Int. Ed. 2007, 46, 393-396
[56] B. A. Schweitzer, E. T. Kool, J. Org. Chem. 1994, 59, 7238-7242.
[57] J. M. Coull, M. Egholm, R. P. Hodge, M. Ismail, S. B. Rajur, US 6133444, 2000.
[58] For the previously reported route, see: N. Shibata, B. K. Das, H. Honjo, Y. Takeuchi, J. Chem. Soc., Perkin Trans. 1, 2001, 1605-1611.
[59] Rocheleau T, Rasmussen S, Nielsen PE, Jacobi MN, Ziock H: Emergence of protocellular growth laws. Philosophical Transactions of the Royal Society B Biol Sci 2007, 362: 1841-1845.
[60] Nielsen PE, Egholm M, Berg RH, Buchardt O: Sequence-selective recognition of DNA by strand displacement with a thymine-substituted polyamide. Science 1991, 254: 1497-1500.
[61] Nielsen PE, Egholm M, Editors.: Peptide Nucleic Acids: Protocols and Applications. Horizon Scientific Press; 1999.
[62] Nielsen PE: Peptide nucleic acids and the origin of life. Chemistry & Biodiversity 2007, 4: 1996-2002.
[63] Nielsen PE: Peptide Nucleic Acid. A Molecule with Two Identities. Accounts of Chemical Research 1999, 32: 624-630.
[64] Sen A, Nielsen PE: On the stability of peptide nucleic acid duplexes in the presence of organic solvents. Nucleic Acids Research 2007, 35: 3367-3374.
[65] Mattes A, Seitz O: Sequence fidelity of a template-directed PNA-ligation reaction. Chemical Communication 2001, 2050-2051.
[66] Dose C, Ficht S, Seitz O: Reducing product inhibition in DNA-template-controlled ligation reactions. Angewandte Chemie 2006, 45: 5369-5373.